Solutions for computational biology and bioinformatics
Code Ocean supports computational research from every angle and at every type of life science research organization.
Solutions for every member of the team
Computational scientists
Code Ocean makes it easy for computational scientists and bioinformaticians to perform analysis, build pipelines, and reproduce their results in a secure cloud-based environment.
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IT & engineering
Get computational teams up and running faster in the cloud, less dependent on IT and engineering resources, and using standardized computing environments across your organization.
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R&D leadership
Code Ocean creates an immutable scientific system of record. Prove what you discovered, when you discovered it, and how—without any additional work or platform lock-in.
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Bench scientists
Code Ocean makes it easier for bench scientists to work directly with computational colleagues. Spend less time waiting for analysis and more time moving research forward.
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Customer Case Study: Ochre Bio
How Ochre Bio automated a manual image processing workflow with Nextflow, speeding up their image pre-processing workflow by 10x and improving collaboration in their global team.
Solutions for every organization
Biotechs
Get started and up to speed with minimal IT support to make powerful, reproducible bioinformatics tools available and accessible to the whole team
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Pharma
Computational collaboration at scale across the entire research organization. FAIR, reproducible, traceable, and exportable across any time horizon with no lock-in.
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Research institutes
Accelerate onboarding for new team members, work collaboratively across different teams, and make your research more accessible and interoperable.
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Universities
Use cloud computing without spending any time on system administration. Keep costs low and help new researchers get set up with new environments and resources in minutes, not weeks.
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.svg) Finance
Develop and manage financial machine learning models at scale for risk management, algo trading, fraud detection, customer segmentation and portfolio management, while adhering to strict compliance.
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What our customers say
“The biggest win at Lantern is the pipeline we developed, and the value of Code Ocean was that it allowed the whole team to work together ... we were able to have a shared environment for collaboration.”
Peter Carr
Principal Platform Architect, Lantern Pharma
“Code Ocean sped up our internal image pre-processing computational workflow by at least 10x, improving collaboration and productivity between our global teams across time zones and removing the need for complicated and painful cloud computing infrastructure set up.”
Dimitris Polychronopoulos
Director of In Silico Biology, Ochre Bio
“Code Ocean's self-service capabilities makes it easy for our scientists to do their work reproducibly. New users to the platform can get far with just a little support, giving our engineers time to focus on domain-specific challenges.”
Dr. David Feng
Director of Scientific Computing, Allen Institute
“Code Ocean totally solves tracking and reproducing analysis for researchers and increases trust in the results.”
Benjamin Haibe-Kains, Ph.D
Senior Scientist, Princess Margaret Cancer Centre
“Code Ocean enabled us to move from individual mode to true teamwork and allowed us to develop standards for the group and share code efficiently. We improved as we moved while being able to reproduce every result.”
Yair Benita, PhD
Head of Science Operations, CytoReason
Solutions for every use case
Data analysis
Use ready-made template Compute Capsules to analyze data, or develop your own analysis workflow in your preferred language and IDE.
Data management
Code Ocean uses custom metadata and controlled vocabularies to ensure consistency and improve searchability.
Bioinformatics pipelines
Build pipelines using a modular, visual builder, or import from nf-core in 1-click. Runs on AWS Batch.
AI and machine learning
Install GPU-ready environments and provision GPU resources in a few clicks. MLflow built-in.
Multiomics
Process and integrate multiomics data with clear provenance and reproducibility, and no-code visualization apps built-in.
Image processing
Automate and parallelize multi-step image processing workflows with easy-to-assemble image processing pipelines and data asset tracking.
Cloud management
Easily provision the compute you need. Spot instances, idleness detection, and automated shutdown help reduce cloud costs.
Result provenance
Keep track of all how all result data was generated with automated result provenance through the generation of the Lineage Graph.